, including all inherited members.
| ApplyFreqFilter(unsigned mincount, bool haveOutgroup=false, unsigned outgroup=0) | Sequence::PolyTable | [virtual] |
| assign(PolyTable::const_site_iterator beg, PolyTable::const_site_iterator end) | Sequence::PolyTable | |
| assign(const numeric_type *_positions, const size_t &_num_positions, const string_type *_data, const size_t &_num_individuals) | Sequence::PolyTable | [inline] |
| begin() | Sequence::PolyTable | |
| begin() const | Sequence::PolyTable | |
| Binary(bool haveOutgroup=false, unsigned outgroup=0, bool strictInfSites=true) | Sequence::PolyTable | [virtual] |
| const_data_iterator typedef | Sequence::PolyTable | |
| const_pos_iterator typedef | Sequence::PolyTable | |
| const_reference typedef (defined in Sequence::PolyTable) | Sequence::PolyTable | |
| const_site_iterator typedef | Sequence::PolyTable | |
| data_iterator typedef | Sequence::PolyTable | |
| empty() const | Sequence::PolyTable | |
| end() | Sequence::PolyTable | |
| end() const | Sequence::PolyTable | |
| GetData(void) const | Sequence::PolyTable | |
| GetPositions(void) const | Sequence::PolyTable | |
| numseqs (defined in Sequence::PolySites) | Sequence::PolySites | [protected] |
| numsites(void) const | Sequence::PolyTable | [inline] |
| operator Sequence::polySiteVector() const | Sequence::PolyTable | |
| operator!=(const PolyTable &rhs) const (defined in Sequence::PolyTable) | Sequence::PolyTable | [virtual] |
| operator==(const PolyTable &rhs) const (defined in Sequence::PolyTable) | Sequence::PolyTable | [virtual] |
| operator[](const size_type &i) const | Sequence::PolyTable | [inline] |
| operator[](const size_type &i) | Sequence::PolyTable | [inline] |
| pbegin() | Sequence::PolyTable | |
| pbegin() const | Sequence::PolyTable | |
| pend() | Sequence::PolyTable | |
| pend() const | Sequence::PolyTable | |
| PolySites(void) (defined in Sequence::PolySites) | Sequence::PolySites | |
| PolySites(const std::vector< __DataType > &alignment, bool strictInfSites=0, bool ignoregaps=1, bool skipMissing=false, bool skipAdjSNP=false, unsigned freqfilter=0) | Sequence::PolySites | [inline] |
| PolySites(const std::vector< double > &List, const std::vector< std::string > &stringList) | Sequence::PolySites | |
| PolySites(PolyTable::const_site_iterator beg, PolyTable::const_site_iterator end) (defined in Sequence::PolySites) | Sequence::PolySites | |
| PolyTable(const size_t &nsam=0, const size_t nsnps=0) | Sequence::PolyTable | [explicit] |
| PolyTable(PolyTable::const_site_iterator beg, PolyTable::const_site_iterator end) (defined in Sequence::PolyTable) | Sequence::PolyTable | [explicit] |
| pos_iterator typedef | Sequence::PolyTable | |
| position(const std::vector< double >::size_type &i) const | Sequence::PolyTable | [inline] |
| print(std::ostream &stream) const | Sequence::PolySites | [virtual] |
| read(std::istream &s) | Sequence::PolySites | [virtual] |
| reference typedef (defined in Sequence::PolyTable) | Sequence::PolyTable | |
| RemoveAmbiguous(bool skipOutgroup=false, unsigned outgroup=0) | Sequence::PolyTable | [virtual] |
| RemoveMissing(bool skipOutgroup=false, unsigned outgroup=0) | Sequence::PolyTable | [virtual] |
| RemoveMultiHits(bool skipOutgroup=false, unsigned outgroup=0) | Sequence::PolyTable | [virtual] |
| sbegin() const | Sequence::PolyTable | |
| send() const | Sequence::PolyTable | |
| seqlen (defined in Sequence::PolySites) | Sequence::PolySites | [protected] |
| size(void) const | Sequence::PolyTable | [inline] |
| size_type typedef (defined in Sequence::PolyTable) | Sequence::PolyTable | |
| ~PolySites(void) (defined in Sequence::PolySites) | Sequence::PolySites | [inline] |
| ~PolyTable(void) (defined in Sequence::PolyTable) | Sequence::PolyTable | [virtual] |
