Sequence::ClustalW< T > Member List

This is the complete list of members for Sequence::ClustalW< T >, including all inherited members.

AlignStream(const std::vector< T > &_data) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
AlignStream(const AlignStream< T > &a) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
AlignStream(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
assign(const_iterator beg, const_iterator end)	Sequence::AlignStream< T >	[inline]
begin() (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
begin() const (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
ClustalW(void) (defined in Sequence::ClustalW< T >)	Sequence::ClustalW< T >	[inline]
ClustalW(const AlignStream< T > &a) (defined in Sequence::ClustalW< T >)	Sequence::ClustalW< T >	[inline]
const_iterator typedef	Sequence::AlignStream< T >
const_reference typedef (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
Data(void)	Sequence::AlignStream< T >	[inline]
end() (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
end() const (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline]
Gapped(void)	Sequence::AlignStream< T >	[inline]
IsAlignment(void)	Sequence::AlignStream< T >	[inline]
iterator typedef	Sequence::AlignStream< T >
operator=(const AlignStream< T > &rhs) (defined in Sequence::ClustalW< T >)	Sequence::ClustalW< T >	[inline]
operator[](const size_type &i)	Sequence::AlignStream< T >	[inline]
operator[](const size_type &i) const	Sequence::AlignStream< T >	[inline]
print(std::ostream &s) const	Sequence::ClustalW< T >	[inline, virtual]
read(std::istream &s)	Sequence::ClustalW< T >	[inline, virtual]
reference typedef (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
RemoveGaps(void)	Sequence::AlignStream< T >	[inline]
RemoveTerminalGaps(void)	Sequence::AlignStream< T >	[inline]
size(void) const	Sequence::AlignStream< T >	[inline]
size_type typedef (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >
Trim(std::vector< int >sites)	Sequence::AlignStream< T >	[inline]
TrimComplement(std::vector< int >sites)	Sequence::AlignStream< T >	[inline]
UnGappedLength(void)	Sequence::AlignStream< T >	[inline]
~AlignStream(void) (defined in Sequence::AlignStream< T >)	Sequence::AlignStream< T >	[inline, virtual]
~ClustalW(void) (defined in Sequence::ClustalW< T >)	Sequence::ClustalW< T >	[inline]