SeqRegexes.hpp File Reference

various useful rexex-based functions for dealing with data. Declares Sequence::basic_dna_alphabet,Sequence::full_dna_alphabet, Sequence::pep_alphabet, and the function Sequence::validSeq. More...

#include <boost/regex.hpp>

Go to the source code of this file.

Namespaces
namespace	Sequence
	The namespace in which this library resides.
Functions
template<typename Iter >
bool	Sequence::validSeq (Iter beg, Iter end, const char *_pattern=Sequence::basic_dna_alphabet, const bool icase=true)
Variables
const char *	Sequence::basic_dna_alphabet = "[^AGTCN\\-]"
const char *	Sequence::full_dna_alphabet = "[^AGCTNXMRWSKVHDB\\-]"
const char *	Sequence::pep_alphabet = "[^ARNDBCQEZGHILKMFPSTWYV\\-]"

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Detailed Description

various useful rexex-based functions for dealing with data. Declares Sequence::basic_dna_alphabet,Sequence::full_dna_alphabet, Sequence::pep_alphabet, and the function Sequence::validSeq.

This file declares various functions using regular expressions. These functions are in a separate header because they have include directives that depend on other libraries, notably BOOST (http://www.boost.org)

Definition in file SeqRegexes.hpp.