UCI Ecology and Evolutionary
Biology
Colleagues
Peter Andolfatto
Doris
Bachtrog
Dick Hudson
Molly Przeworski
Software used in the lab:
Population genetics software:
www.molpopgen.org/software/
Hudon's "ms"
Bioinformatics:
bioperl
MySQL
General Programming:
boost - the things you wish were in
standard C++ are in boost
bash - shell programming is underrated
Scientific Computing:
GNU Scientific Library - excellent
random number generation system, numerical
integrators, etc. Free alternative to "Numerical
Recipes" (and generally higher quality)
Grid Computing:
Sun's SGE
SGE info site
My tutorial on array jobs on SGE systems
Math/Stats:
R
Sequence assembly & visualization:
phred/phrap/consed
Geneious (nice alternative to
Sequencher)
Outside of the
lab:
Independent Fabrication